Basic Information
Locus ID:
Chr09G004120
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Hippocampus abundant transcript-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000009 | 6890388 | 6913253 | - | Chr09G004120 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17330 | MFS_SLC46_TetA_like | 20 | 414 | 3.03549E-43 | - |
| Pfam | PF07690 | Major Facilitator Superfamily | 8 | 379 | 9.8E-24 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 7 | 418 | 2.49E-37 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 4 | 422 | 7.0E-40 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 3 | 425 | 11.079737 | IPR020846 |
| ProSitePatterns | PS00216 | Sugar transport proteins signature 1. | 65 | 82 | - | IPR005829 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 303 | 324 | 4.1E-5 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 53 | 69 | 4.1E-5 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 363 | 386 | 4.1E-5 | IPR001958 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 217 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42210.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_039828104.1 | hippocampus abundant transcript 1 protein-like [Panicum virgatum] | 0 |
| P02982 | Tetracycline resistance protein, class A OS=Escherichia coli OX=562 GN=tetA PE=3 SV=2 | 0 | |
| TrEMBL | A0A8T0MRF0 | MFS domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_9NG467200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology