Basic Information
Locus ID:
Chr09G002990
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000009 | 4702860 | 4703915 | + | Chr09G002990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 26 | 326 | 3.97E-23 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 26 | 326 | 5.4E-15 | IPR015943 |
| SMART | SM00320 | WD40_4 | 244 | 283 | 5.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 14 | 52 | 36.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 198 | 239 | 0.68 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_015692773.2 | autophagy-related protein 18a [Oryza brachyantha] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | I1HUX4 | WD_REPEATS_REGION domain-containing protein OS=Brachypodium distachyon OX=15368 GN=100831123 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for Chr09G002990.