Basic Information
Locus ID:
Chr09G000740
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000009 | 984411 | 986879 | - | Chr09G000740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03829 | Sina | 186 | 314 | 4.20666E-69 | - |
| CDD | cd16571 | RING-HC_SIAHs | 70 | 108 | 1.67691E-14 | - |
| Pfam | PF03145 | Seven in absentia protein family | 114 | 313 | 4.1E-81 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 125 | 317 | 2.35E-50 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 71 | 113 | 2.12E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 66 | 114 | 2.0E-6 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 120 | 180 | 2.2E-18 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 181 | 313 | 8.1E-39 | IPR008974 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 72 | 108 | 9.464913 | IPR001841 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 125 | 185 | 14.270838 | IPR013010 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_002453731.1 | E3 ubiquitin-protein ligase SINAT5 [Sorghum bicolor] | 0 |
| Q84JL3 | E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana OX=3702 GN=SINAT3 PE=1 SV=1 | 0 | |
| TrEMBL | C5Y0I4 | RING-type E3 ubiquitin transferase OS=Sorghum bicolor OX=4558 GN=SORBI_3004G130900 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology