HalophFGD

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Basic Information
Locus ID: Chr09G000330
Species & Taxonomic ID: Sporobolus alterniflorus & 29706
Genome Assembly: GWHCBIM00000000
Description:
Maps and Mapping Data
Chromosome Start End Strand ID
GWHCBIM00000009 460783 461556 - Chr09G000330
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
0.00 0.00 Da 0.00 0.00 0.00
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
SUPERFAMILY SSF81383 F-box domain 27 94 1.96E-7 IPR036047
Gene3D G3DSA:1.20.1280.50 - 26 78 3.6E-5 -
ProSiteProfiles PS50181 F-box domain profile. 28 75 9.868391 IPR001810
MobiDBLite mobidb-lite consensus disorder prediction 1 25 - -
MobiDBLite mobidb-lite consensus disorder prediction 214 228 - -
MobiDBLite mobidb-lite consensus disorder prediction 214 257 - -
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
RefSeq XP_002442530.1 uncharacterized protein LOC8084401 [Sorghum bicolor] 0
TrEMBL A0A835FDT2 F-box domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_013330 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Poaceae Echinochloa crus-galli 29 AH03.1550, AH03.1552, AH03.1569, AH03.1583, AH03.1587 ...
AH03.1588, AH05.3910, AH05.3912, AH08.1325, BH03.1102, BH03.1726, BH03.1731, BH03.1750, BH03.1752, BH03.1756, BH03.1757, BH03.1759, BH03.1761, BH04.374, BH05.3930, CH03.1882, CH03.1887, CH03.1902, CH03.1903, CH03.1909, CH03.1911, CH03.1912, CH03.1913, CH05.4151
Poaceae Eleusine coracana subsp. coracana 13 gene-QOZ80_5BG0443750, gene-QOZ80_6AG0532110 ...
gene-QOZ80_6AG0532120, gene-QOZ80_6AG0532130, gene-QOZ80_6AG0532180, gene-QOZ80_6AG0532270, gene-QOZ80_6BG0485680, gene-QOZ80_6BG0485700, gene-QOZ80_6BG0485720, gene-QOZ80_6BG0485770, gene-QOZ80_6BG0485780, gene-QOZ80_6BG0485800, gene-QOZ80_7BG0588220
Poaceae Hordeum vulgare 5 HORVU.MOREX.r3.1HG0064930.1.CDS1 ...
HORVU.MOREX.r3.1HG0088780.1.CDS1, HORVU.MOREX.r3.5HG0473390.1, HORVU.MOREX.r3.5HG0473630.1.CDS1, HORVU.MOREX.r3.5HG0473650.1.CDS1
Poaceae Lolium multiflorum 20 gene-QYE76_004511, gene-QYE76_004516, gene-QYE76_004520 ...
gene-QYE76_004521, gene-QYE76_004575, gene-QYE76_004579, gene-QYE76_004584, gene-QYE76_004585, gene-QYE76_004586, gene-QYE76_004587, gene-QYE76_007693, gene-QYE76_007697, gene-QYE76_007699, gene-QYE76_007700, gene-QYE76_015274, gene-QYE76_015276, gene-QYE76_015277, gene-QYE76_015278, gene-QYE76_015279, gene-QYE76_015281
Poaceae Oryza coarctata 8 Oco03G007580, Oco04G007920, Oco17G002730, Oco17G002750 ...
Oco18G002520, Oco18G002580, Oco18G002590, Oco18G002610
Poaceae Oryza sativa 15 LOC_Os02g17480.1, LOC_Os03g26840.1, LOC_Os09g15440.1 ...
LOC_Os09g15530.1, LOC_Os09g15540.1, LOC_Os09g15550.1, LOC_Os09g15560.1, LOC_Os09g15570.1, LOC_Os09g15660.1, LOC_Os09g16810.1, LOC_Os09g17146.1, LOC_Os09g17152.1, LOC_Os09g17190.1, LOC_Os09g17530.1, LOC_Os09g17540.1
Poaceae Paspalum vaginatum 3 gene-BS78_02G151200, gene-BS78_02G151900 ...
gene-BS78_08G118700
Poaceae Puccinellia tenuiflora 7 Pt_Chr0303448, Pt_Chr0502216, Pt_Chr0503635, Pt_Chr0505577 ...
Pt_Chr0505578, Pt_Chr0702622, Pt_Chr0702646
Poaceae Sporobolus alterniflorus 3 Chr09G000330, Chr11G010210, Chr27G007970
Poaceae Thinopyrum elongatum 3 Tel1E01G664100, Tel5E01G310300, Tel5E01G310600
Poaceae Triticum dicoccoides 7 gene_TRIDC1AG038510, gene_TRIDC1AG059200 ...
gene_TRIDC1BG043710, gene_TRIDC1BG043720, gene_TRIDC5AG029670, gene_TRIDC5AG029860, gene_TRIDC5BG031550
Poaceae Triticum aestivum 27 TraesCS1A02G257600.1.cds1, TraesCS1A02G257700.1.cds1 ...
TraesCS1A02G378400.1.cds1, TraesCS1B02G268100.1.cds1, TraesCS1B02G430400.1.cds1, TraesCS1B02G442900.1.cds1, TraesCS1B02G443000.1.cds1, TraesCS1D02G256900.1.cds1, TraesCS1D02G257000.1.cds1, TraesCS1D02G409200.1.cds1, TraesCS3A02G532500.1, TraesCS3B02G446900.1.cds1, TraesCS3B02G609300.1.cds1, TraesCS3B02G609700.1.cds1, TraesCS3D02G537700.1.cds1, TraesCS5A02G182500.1.cds1, TraesCS5A02G183400.1, TraesCS5A02G183500.1.cds1, TraesCS5B02G180600.1.cds1, TraesCS5B02G180700.1.cds1, TraesCS5B02G181600.1.cds1, TraesCS5B02G181800.1.cds1, TraesCS5B02G181900.1.cds1, TraesCS5D02G187000.1.cds1, TraesCS5D02G188500.1.cds1, TraesCSU02G003500.1.cds1, TraesCSU02G218700.1.cds1
Poaceae Zea mays 1 Zm00001eb098120_P001
Poaceae Zoysia japonica 9 nbis-gene-20097, nbis-gene-20098, nbis-gene-20099 ...
nbis-gene-20103, nbis-gene-31069, nbis-gene-35534, nbis-gene-35536, nbis-gene-50864, nbis-gene-55803
Poaceae Zoysia macrostachya 5 Zma_g32372, Zma_g32373, Zma_g32374, Zma_g32375, Zma_g5090
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.