Basic Information
Locus ID:
Chr08G022270
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Short Name:
MYB3R-5
Description:
Myb-like DNA-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000008 | 57365242 | 57368699 | - | Chr08G022270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00311 | TIM | 6 | 275 | 5.2674E-111 | IPR000652 |
| Pfam | PF00121 | Triosephosphate isomerase | 240 | 274 | 2.3E-8 | IPR000652 |
| Pfam | PF00121 | Triosephosphate isomerase | 7 | 212 | 2.6E-68 | IPR000652 |
| SUPERFAMILY | SSF51351 | Triosephosphate isomerase (TIM) | 4 | 275 | 1.09E-79 | IPR035990 |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 1 | 283 | 3.1E-109 | IPR013785 |
| TIGRFAM | TIGR00419 | tim: triose-phosphate isomerase | 7 | 212 | 6.2E-75 | IPR000652 |
| ProSiteProfiles | PS51440 | Triosephosphate isomerase (TIM) family profile. | 5 | 276 | 72.516235 | IPR000652 |
| ProSitePatterns | PS00171 | Triosephosphate isomerase active site. | 165 | 175 | - | IPR020861 |
| Hamap | MF_00147_B | Triosephosphate isomerase [tpiA]. | 4 | 276 | 53.026031 | IPR022896 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G55440.1 | triosephosphate isomerase. Encodes triosephosphate isomerase. | 0 |
| RefSeq | XP_006644990.1 | triosephosphate isomerase, cytosolic-like [Oryza brachyantha] | 0 |
| P48495 | Triosephosphate isomerase, cytosolic OS=Petunia hybrida OX=4102 GN=TPIP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2T7DEL7 | Triosephosphate isomerase, cytosolic OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_5G096300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology