Basic Information
Locus ID:
Chr08G021990
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000008 | 57036505 | 57037956 | + | Chr08G021990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12906 | RING-variant domain | 105 | 156 | 2.5E-8 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 101 | 159 | 8.12E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 91 | 164 | 6.6E-14 | IPR013083 |
| SMART | SM00744 | ringv_2 | 104 | 157 | 7.8E-15 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 97 | 163 | 17.103338 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 41 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_002458768.1 | uncharacterized protein LOC8060098 isoform X1 [Sorghum bicolor] | 0 |
| TrEMBL | A0A5J9VLZ6 | RING-CH-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_18422 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology