Basic Information
Locus ID:
Chr08G019310
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000008 | 54548082 | 54549084 | + | Chr08G019310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 241 | 278 | 2.58424E-10 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 240 | 284 | 8.8E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 240 | 285 | 7.3E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 216 | 289 | 9.7E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 241 | 278 | 7.4E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 241 | 279 | 10.881201 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 114 | 192 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 153 | 168 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 117 | 152 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 207 | 231 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 169 | 188 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 64 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25030.3 | - | 0 |
| RefSeq | XP_002458987.1 | transcription elongation factor SPT5 [Sorghum bicolor] | 0 |
| TrEMBL | A0A811P5V8 | RING-type domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS23593 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology