Basic Information
Locus ID:
Chr08G017210
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000008 | 52352580 | 52386134 | - | Chr08G017210 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 50 | 174 | 6.10731E-32 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 192 | 520 | 4.60217E-146 | - |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 619 | 872 | 7.4E-73 | IPR024729 |
| Pfam | PF00917 | MATH domain | 57 | 176 | 1.1E-15 | IPR002083 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 882 | 1088 | 3.5E-50 | IPR029346 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 194 | 515 | 3.4E-45 | IPR001394 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 47 | 180 | 2.13E-34 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 189 | 543 | 1.53E-92 | IPR038765 |
| Gene3D | G3DSA:3.10.20.90 | - | 798 | 895 | 2.3E-24 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 680 | 797 | 3.7E-40 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 47 | 190 | 7.5E-45 | IPR008974 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 191 | 519 | 8.6E-88 | - |
| SMART | SM00061 | math_3 | 51 | 155 | 1.7E-12 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 194 | 518 | 39.330776 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 49 | 174 | 33.252403 | IPR002083 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 434 | 451 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 195 | 210 | - | IPR018200 |
| Coils | Coil | Coil | 534 | 554 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11910.1 | ubiquitin-specific protease 13. | 0 |
| RefSeq | XP_025815035.1 | ubiquitin carboxyl-terminal hydrolase 12-like isoform X3 [Panicum hallii] | 0 |
| Q84WU2 | Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2T8IJY3 | ubiquitinyl hydrolase 1 OS=Panicum hallii OX=206008 GN=PAHAL_5G142300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology