Basic Information
Locus ID:
Chr08G016700
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the TUB family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000008 | 51737429 | 51739367 | - | Chr08G016700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01167 | Tub family | 183 | 229 | 5.6E-12 | IPR000007 |
| Pfam | PF00646 | F-box domain | 114 | 156 | 5.7E-4 | IPR001810 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 12 | 46 | 2.23E-6 | IPR011009 |
| SUPERFAMILY | SSF81383 | F-box domain | 102 | 156 | 1.44E-5 | IPR036047 |
| SUPERFAMILY | SSF54518 | Tubby C-terminal domain-like | 175 | 229 | 1.62E-10 | IPR025659 |
| Gene3D | G3DSA:1.20.1280.50 | - | 109 | 161 | 1.3E-6 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 9 | 54 | 1.2E-6 | - |
| Gene3D | G3DSA:3.20.90.10 | Tubby Protein; Chain A | 179 | 235 | 9.7E-9 | IPR025659 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53320.1 | tubby like protein 7. Member of TLP family | 0 |
| RefSeq | XP_004970029.1 | tubby-like F-box protein 2 [Setaria italica] | 0 |
| Q68Y48 | Tubby-like F-box protein 9 OS=Oryza sativa subsp. japonica OX=39947 GN=TULP9 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0A9P2N2 | Tubby-like F-box protein OS=Arundo donax OX=35708 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | BH02.3642, BH05.653, CH02.3178 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr08G016700 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-31125 |