Basic Information
Locus ID:
Chr08G016490
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000008 | 51373981 | 51374962 | + | Chr08G016490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 65 | 108 | 2.1E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 60 | 114 | 4.5E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 57 | 116 | 4.0E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 66 | 107 | 7.2E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 66 | 108 | 12.415513 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G42350.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_025815803.1 | RING-H2 finger protein ATL39-like [Panicum hallii] | 0 |
| Q9SLC4 | RING-H2 finger protein ATL40 OS=Arabidopsis thaliana OX=3702 GN=ATL40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9SFL9 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_57684 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 2 | COCNU_06G005980, COCNU_14G003980 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103709527 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.3292, BH02.3671, CH02.3207 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1BG0083760 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0289690.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_055187 |
| Poaceae | Oryza coarctata | 2 | Oco01G020540, Oco02G021080 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g55110.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G280000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0602638 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G009350, Chr05G024150, Chr08G016490 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G479400 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG043390, gene_TRIDC3AG043400 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS3A02G293400.1.cds1, TraesCS3A02G293500.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb152830_P001, Zm00001eb370730_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-11902, nbis-gene-31084 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g11169, Zma_g8680 |