Basic Information
Locus ID:
Chr08G015900
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000008 | 50599508 | 50602777 | + | Chr08G015900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 704 | 976 | 2.08337E-87 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 700 | 973 | 2.2E-40 | IPR001245 |
| Pfam | PF13516 | Leucine Rich repeat | 569 | 584 | 0.29 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 38 | 79 | 3.4E-5 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 157 | 215 | 1.5E-7 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 516 | 529 | 0.67 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 302 | 337 | 2.7E-6 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 84 | 141 | 2.9E-8 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 695 | 981 | 1.2E-67 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 95 | 392 | 4.76E-63 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 301 | 598 | 8.96E-52 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 783 | 997 | 1.3E-57 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 196 | 299 | 1.2E-25 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 300 | 613 | 5.0E-83 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 683 | 782 | 1.5E-17 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 37 | 195 | 3.3E-40 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 179 | 203 | 39.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 698 | 1001 | 2.7E-30 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 513 | 537 | 79.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 105 | 128 | 220.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 252 | 276 | 21.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 546 | 570 | 41.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 129 | 153 | 46.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 348 | 372 | 0.16 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 515 | 536 | 7.180607 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 698 | 1001 | 34.70393 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 704 | 732 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 826 | 838 | - | IPR008271 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 303 | 316 | 9.1E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 546 | 559 | 9.1E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 980 | 1009 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25930.1 | Protein kinase family protein with leucine-rich repeat domain. | 0 |
| RefSeq | XP_034593991.1 | receptor-like protein kinase HSL1 isoform X1 [Setaria viridis] | 0 |
| C0LGX3 | LRR receptor-like serine/threonine-protein kinase HSL2 OS=Arabidopsis thaliana OX=3702 GN=HSL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U6UNB3 | Protein kinase domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_5G316200v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology