Basic Information
Locus ID:
Chr08G015140
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000008 | 49471458 | 49482825 | - | Chr08G015140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05495 | CHY zinc finger | 54 | 135 | 4.0E-17 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 242 | 273 | 7.0E-8 | IPR039512 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 51 | 125 | 3.66E-15 | IPR037274 |
| Gene3D | G3DSA:2.20.28.10 | - | 247 | 274 | 6.0E-9 | - |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 125 | 209 | 15.690195 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 47 | 123 | 24.873308 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 201 | 242 | 8.683004 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25560.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_021311671.1 | E3 ubiquitin-protein ligase MIEL1-like [Sorghum bicolor] | 0 |
| Q5JL96 | Probable E3 ubiquitin-protein ligase RZFP34 OS=Oryza sativa subsp. japonica OX=39947 GN=RZFP34 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1B6Q5R2 | CHY-type domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3003G278500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology