Basic Information
Locus ID:
Chr08G014040
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
E3 ubiquitin ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000008 | 47854029 | 47864244 | - | Chr08G014040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 644 | 794 | 1.28889E-28 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1105 | 1148 | 1.09104E-17 | - |
| CDD | cd12108 | Hr-like | 39 | 165 | 1.37631E-34 | - |
| CDD | cd12108 | Hr-like | 295 | 423 | 1.55347E-16 | - |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 642 | 795 | 5.7E-8 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 292 | 424 | 4.1E-6 | IPR012312 |
| Pfam | PF05495 | CHY zinc finger | 977 | 1052 | 1.7E-18 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 1153 | 1210 | 7.7E-24 | IPR039512 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 42 | 167 | 2.2E-12 | IPR012312 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 969 | 1033 | 1.57E-16 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1104 | 1151 | 1.01E-6 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1043 | 1098 | 3.27E-15 | IPR037275 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 639 | 852 | 1.8E-24 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1101 | 1149 | 2.2E-8 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 1177 | 1218 | 1.2E-16 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 295 | 442 | 4.7E-17 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 34 | 185 | 6.2E-35 | - |
| SMART | SM00184 | ring_2 | 1106 | 1147 | 1.7E-5 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1042 | 1105 | 29.816021 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1106 | 1147 | 11.235273 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 970 | 1039 | 25.321053 | IPR008913 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 867 | 886 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_025814043.1 | zinc finger protein BRUTUS-like [Panicum hallii] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9SK57 | Zinc finger protein BRUTUS (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_55247 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology