Basic Information
Locus ID:
Chr08G009630
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000008 | 35084098 | 35089137 | + | Chr08G009630 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 370 | 499 | 2.18225E-59 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 175 | 344 | 1.3E-48 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 381 | 490 | 1.1E-32 | IPR001650 |
| SUPERFAMILY | SSF51045 | WW domain | 13 | 55 | 6.33E-8 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 223 | 506 | 2.48E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 362 | 532 | 1.2E-56 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 126 | 361 | 2.6E-87 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 14 | 62 | 1.3E-5 | - |
| SMART | SM00487 | ultradead3 | 170 | 373 | 1.6E-61 | IPR014001 |
| SMART | SM00490 | helicmild6 | 410 | 490 | 7.5E-35 | IPR001650 |
| SMART | SM00456 | ww_5 | 21 | 54 | 1.2E-4 | IPR001202 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 151 | 179 | 11.504468 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 385 | 529 | 25.257912 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 182 | 356 | 30.100622 | IPR014001 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 54 | 10.955 | IPR001202 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 52 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 302 | 310 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 542 | 559 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 110 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 566 | 604 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 751 | 767 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 605 | 645 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 649 | 742 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 120 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 536 | 823 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_025819517.1 | DEAD-box ATP-dependent RNA helicase 40-like isoform X1 [Panicum hallii] | 0 |
| Q5JKF2 | DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0549400 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5J9VDI3 | DEAD-box ATP-dependent RNA helicase 14 OS=Eragrostis curvula OX=38414 GN=EJB05_15931 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology