Basic Information
Locus ID:
Chr08G005680
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
ABC transporter C family member 3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000008 | 6421506 | 6427383 | + | Chr08G005680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 308 | 596 | 2.57595E-91 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 622 | 822 | 1.47045E-109 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1269 | 1489 | 3.14741E-120 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 926 | 1246 | 4.00439E-87 | IPR044726 |
| Pfam | PF00005 | ABC transporter | 1288 | 1436 | 2.1E-29 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 311 | 575 | 1.1E-21 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 640 | 774 | 3.8E-19 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 928 | 1195 | 1.1E-24 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 924 | 1252 | 1.05E-43 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 301 | 604 | 6.93E-31 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 619 | 844 | 1.78E-55 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1261 | 1501 | 1.18E-65 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 607 | 857 | 1.1E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1255 | 1507 | 3.6E-78 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 888 | 1252 | 2.8E-59 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 284 | 604 | 4.2E-46 | IPR036640 |
| SMART | SM00382 | AAA_5 | 649 | 822 | 2.3E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1297 | 1488 | 2.6E-13 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 928 | 1234 | 32.515842 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 307 | 588 | 30.315922 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 622 | 845 | 23.262743 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1271 | 1505 | 17.053623 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 747 | 761 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 861 | 900 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 878 | 900 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_004968378.2 | ABC transporter C family member 3 [Setaria italica] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | K3XDS0 | ABC transporter C family member 3 OS=Setaria italica OX=4555 GN=101777732 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology