Basic Information
Locus ID:
Chr08G005570
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000008 | 6172716 | 6177067 | - | Chr08G005570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 357 | 486 | 9.54407E-64 | - |
| CDD | cd00201 | WW | 22 | 50 | 0.0031272 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 162 | 331 | 6.8E-48 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 369 | 477 | 1.4E-32 | IPR001650 |
| SUPERFAMILY | SSF51045 | WW domain | 16 | 52 | 1.2E-7 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 210 | 493 | 2.09E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 351 | 518 | 1.5E-54 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 11 | 57 | 3.0E-5 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 112 | 350 | 7.5E-87 | IPR027417 |
| SMART | SM00456 | ww_5 | 20 | 53 | 1.2E-6 | IPR001202 |
| SMART | SM00490 | helicmild6 | 397 | 477 | 1.5E-33 | IPR001650 |
| SMART | SM00487 | ultradead3 | 157 | 360 | 1.5E-65 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 372 | 516 | 26.004822 | IPR001650 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 19 | 53 | 11.1126 | IPR001202 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 138 | 166 | 9.729445 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 169 | 343 | 31.408401 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 289 | 297 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 612 | 640 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 589 | 640 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 589 | 603 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 95 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_025815285.1 | DEAD-box ATP-dependent RNA helicase 14-like isoform X1 [Panicum hallii] | 0 |
| Q5VQL1 | DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0172200 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9UCX5 | DEAD-box ATP-dependent RNA helicase 14 OS=Eragrostis curvula OX=38414 GN=EJB05_31258 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology