Basic Information
Locus ID:
Chr08G003960
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
NB-ARC domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000008 | 3890309 | 3903931 | - | Chr08G003960 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18052 | Rx N-terminal domain | 12 | 90 | 1.4E-17 | IPR041118 |
| Pfam | PF00931 | NB-ARC domain | 157 | 396 | 3.1E-38 | IPR002182 |
| Pfam | PF13855 | Leucine rich repeat | 727 | 785 | 8.1E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 853 | 889 | 1.8E-7 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 703 | 725 | 0.045 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 680 | 701 | 0.43 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 632 | 653 | 0.63 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 485 | 834 | 5.44E-61 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 135 | 409 | 3.15E-54 | IPR027417 |
| SUPERFAMILY | SSF52058 | L domain-like | 816 | 1129 | 5.03E-23 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 839 | 924 | 4.6E-11 | IPR032675 |
| Gene3D | G3DSA:1.20.5.4130 | - | 13 | 121 | 5.8E-14 | - |
| Gene3D | G3DSA:1.10.8.430 | - | 309 | 394 | 9.3E-8 | IPR042197 |
| Gene3D | G3DSA:1.10.10.10 | - | 395 | 495 | 1.3E-8 | IPR036388 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 770 | 838 | 1.3E-9 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 951 | 1145 | 5.6E-17 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 548 | 769 | 3.0E-59 | IPR032675 |
| Gene3D | G3DSA:3.40.50.300 | - | 131 | 301 | 6.0E-29 | IPR027417 |
| SMART | SM00369 | LRR_typ_2 | 562 | 582 | 250.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 878 | 902 | 250.0 | IPR003591 |
| SMART | SM00367 | LRR_CC_2 | 854 | 881 | 200.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 749 | 776 | 42.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 1055 | 1087 | 520.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 629 | 656 | 110.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 798 | 823 | 47.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 677 | 704 | 160.0 | IPR006553 |
| SMART | SM00369 | LRR_typ_2 | 701 | 725 | 96.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 854 | 877 | 7.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 653 | 676 | 220.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 856 | 878 | 7.781261 | IPR001611 |
| PRINTS | PR00364 | Disease resistance protein signature | 675 | 691 | 3.2E-19 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 243 | 257 | 3.2E-19 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 342 | 356 | 3.2E-19 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 178 | 193 | 3.2E-19 | - |
| Coils | Coil | Coil | 38 | 58 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14470.1 | NB-ARC domain-containing disease resistance protein. | 0 |
| RefSeq | XP_025815815.1 | putative disease resistance protein RGA1 isoform X2 [Panicum hallii] | 0 |
| Q7XA42 | Putative disease resistance protein RGA1 OS=Solanum bulbocastanum OX=147425 GN=RGA1 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2T7DNU7 | Rx_N domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_5G416300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology