Basic Information
Locus ID:
Chr08G003020
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000008 | 2797748 | 2806723 | - | Chr08G003020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 478 | 517 | 0.18 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 911 | 942 | 0.015 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 440 | 475 | 0.0012 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 335 | 652 | 7.33E-40 | IPR036322 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 504 | 1040 | 7.85E-38 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 527 | 666 | 7.7E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 316 | 526 | 9.3E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 965 | 1118 | 1.4E-5 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 737 | 964 | 5.6E-23 | IPR015943 |
| SMART | SM00320 | WD40_4 | 861 | 901 | 2.2 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.2E-13 | IPR006595 |
| SMART | SM00320 | WD40_4 | 999 | 1035 | 5.3 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 3.1E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 434 | 475 | 5.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 817 | 858 | 82.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1058 | 1090 | 270.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 521 | 564 | 100.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 389 | 428 | 37.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 567 | 610 | 3.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 477 | 518 | 0.0011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 328 | 367 | 0.016 | IPR001680 |
| SMART | SM00320 | WD40_4 | 904 | 943 | 1.6E-4 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.408579 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 911 | 946 | 10.442869 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.297499 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 911 | 952 | 13.11507 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 588 | 619 | 9.138305 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 441 | 476 | 9.572741 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 462 | 476 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1089 | 1129 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1112 | 1129 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16830.1 | TOPLESS-related 2. | 0 |
| RefSeq | XP_034596563.1 | protein TPR1 isoform X1 [Setaria viridis] | 0 |
| Q5NBT9 | Protein TPR1 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9UGW4 | WD_REPEATS_REGION domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_32112 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology