Basic Information
Locus ID:
Chr08G002600
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Chromo (CHRromatin Organisation MOdifier) domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000008 | 2445192 | 2452145 | - | Chr08G002600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 452 | 506 | 1.84613E-26 | - |
| CDD | cd04716 | BAH_plantDCM_I | 192 | 319 | 4.03781E-58 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 515 | 874 | 4.4E-32 | IPR001525 |
| Pfam | PF01426 | BAH domain | 195 | 317 | 1.8E-14 | IPR001025 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 453 | 506 | 5.4E-13 | IPR023780 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 350 | 877 | 1.29E-77 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 439 | 514 | 9.38E-17 | IPR016197 |
| Gene3D | G3DSA:2.30.30.490 | - | 138 | 303 | 1.5E-54 | IPR043151 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 352 | 895 | 4.1E-263 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 669 | 843 | 4.1E-263 | - |
| SMART | SM00298 | chromo_7 | 452 | 509 | 2.7E-12 | IPR000953 |
| SMART | SM00439 | BAH_4 | 193 | 318 | 2.0E-20 | IPR001025 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 193 | 318 | 18.353001 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 350 | 884 | 44.823853 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 453 | 507 | 14.005501 | IPR000953 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 474 | 494 | - | IPR023779 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 521 | 533 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 351 | 367 | 2.3E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 610 | 623 | 2.3E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 564 | 578 | 2.3E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 82 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 108 | 124 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 83 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 173 | - | - |
| Coils | Coil | Coil | 22 | 42 | - | - |
| Coils | Coil | Coil | 95 | 115 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_004983483.1 | DNA (cytosine-5)-methyltransferase 3 [Setaria italica] | 0 |
| Q9AXT8 | DNA (cytosine-5)-methyltransferase 1 OS=Zea mays OX=4577 GN=MET2A PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9V7C0 | Chromomethylase 3 OS=Eragrostis curvula OX=38414 GN=EJB05_23142 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology