Basic Information
Locus ID:
Chr07G027880
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000007 | 59818167 | 59822645 | - | Chr07G027880 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 788 | 1056 | 2.99825E-89 | - |
| Pfam | PF00069 | Protein kinase domain | 785 | 981 | 4.1E-43 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 36 | 76 | 1.6E-7 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 524 | 582 | 8.9E-8 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 254 | 276 | 0.43 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 136 | 193 | 6.8E-7 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 760 | 1053 | 7.96E-74 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 126 | 405 | 3.06E-55 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 464 | 674 | 1.36E-35 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 743 | 857 | 6.6E-24 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 35 | 196 | 3.5E-32 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 197 | 295 | 7.3E-25 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 858 | 1057 | 2.6E-56 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 438 | 687 | 6.4E-47 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 296 | 427 | 8.7E-24 | IPR032675 |
| SMART | SM00220 | serkin_6 | 782 | 1034 | 6.5E-36 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 252 | 276 | 10.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 177 | 203 | 380.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 569 | 593 | 20.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 204 | 228 | 13.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 617 | 641 | 60.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 358 | 382 | 350.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 782 | 1061 | 38.972397 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 788 | 810 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 902 | 914 | - | IPR008271 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 593 | 606 | 6.7E-6 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 255 | 268 | 6.7E-6 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02130.2 | - | 0 |
| RefSeq | XP_039782526.1 | LRR receptor-like serine/threonine-protein kinase RPK2 [Panicum virgatum] | 0 |
| Q9S7I6 | LRR receptor-like serine/threonine-protein kinase RPK2 OS=Arabidopsis thaliana OX=3702 GN=RPK2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0NC84 | Protein kinase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_9KG459184 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology