Basic Information
Locus ID:
Chr07G025820
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000007 | 57435958 | 57441635 | + | Chr07G025820 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 338 | 364 | 2.6E-6 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 371 | 392 | 5.3E-4 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 298 | 325 | 3.1E-6 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 291 | 326 | 9.42E-7 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 331 | 366 | 5.18E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 288 | 327 | 1.6E-12 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 328 | 366 | 7.6E-14 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 367 | 399 | 7.0E-8 | - |
| SMART | SM00547 | zf_4 | 371 | 395 | 4.4E-4 | IPR001876 |
| SMART | SM00547 | zf_4 | 299 | 323 | 1.4E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 338 | 362 | 9.9E-8 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 297 | 326 | 9.574297 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 336 | 365 | 10.217952 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 369 | 398 | 9.540421 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 373 | 392 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 340 | 359 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 301 | 320 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 466 | 513 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 471 | 502 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48570.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_025796160.1 | zinc finger protein VAR3, chloroplastic-like [Panicum hallii] | 0 |
| TrEMBL | A0A5J9WC36 | Zinc finger protein VAR3, chloroplastic OS=Eragrostis curvula OX=38414 GN=EJB05_04931 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology