Basic Information
Locus ID:
Chr07G024710
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
zinc-RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000007 | 55893688 | 55895700 | + | Chr07G024710 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 14 | 58 | 1.37632E-29 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 15 | 61 | 1.2E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 12 | 69 | 5.63E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 8 | 75 | 9.0E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 16 | 56 | 2.7E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 16 | 57 | 13.300693 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 31 | 40 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 70 | 99 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 70 | 86 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_004982184.1 | E3 ubiquitin-protein ligase RNF185 [Setaria italica] | 0 |
| Q99942 | E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens OX=9606 GN=RNF5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0A9JBQ9 | RING-type E3 ubiquitin transferase OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology