Basic Information
Locus ID:
Chr07G024130
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Zinc knuckle
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000007 | 55112765 | 55117855 | - | Chr07G024130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16620 | vRING-HC-C4C4_RBBP6 | 263 | 304 | 6.08536E-13 | - |
| Pfam | PF13696 | Zinc knuckle | 173 | 191 | 6.7E-7 | IPR025829 |
| Pfam | PF13696 | Zinc knuckle | 199 | 219 | 2.4E-7 | IPR025829 |
| Pfam | PF08783 | DWNN domain | 4 | 82 | 1.5E-19 | IPR014891 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 171 | 220 | 1.67E-8 | IPR036875 |
| SUPERFAMILY | SSF57850 | RING/U-box | 255 | 327 | 6.67E-11 | - |
| Gene3D | G3DSA:4.10.60.10 | - | 198 | 241 | 3.2E-11 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 86 | 2.3E-19 | - |
| Gene3D | G3DSA:4.10.60.10 | - | 169 | 197 | 4.5E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 246 | 340 | 6.2E-12 | IPR013083 |
| SMART | SM00343 | c2hcfinal6 | 203 | 219 | 0.021 | IPR001878 |
| SMART | SM00343 | c2hcfinal6 | 177 | 193 | 0.074 | IPR001878 |
| SMART | SM01180 | DWNN_2 | 4 | 83 | 1.0E-32 | IPR014891 |
| ProSiteProfiles | PS51282 | DWNN domain profile. | 4 | 83 | 17.389093 | IPR014891 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 204 | 218 | 8.927475 | IPR001878 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 332 | 357 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 332 | 373 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 431 | 456 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 545 | 676 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 422 | 471 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 595 | 676 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 575 | 594 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 123 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47430.4 | - | 0 |
| RefSeq | XP_025791506.1 | E3 ubiquitin ligase PQT3-like [Panicum hallii] | 0 |
| B9DFV2 | E3 ubiquitin ligase PQT3-like OS=Arabidopsis thaliana OX=3702 GN=At5g47430 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9WBV3 | E3 ubiquitin ligase PQT3-like OS=Eragrostis curvula OX=38414 GN=EJB05_05332 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology