Basic Information
Locus ID:
Chr07G023590
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000007 | 54127378 | 54132409 | + | Chr07G023590 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00983 | recA | 62 | 385 | 0.0 | IPR013765 |
| Pfam | PF00154 | recA bacterial DNA recombination protein | 65 | 327 | 2.2E-117 | IPR013765 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 327 | 384 | 1.16E-16 | IPR023400 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 63 | 326 | 2.44E-55 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 92 | 385 | 1.5E-100 | IPR027417 |
| SMART | SM00382 | AAA_5 | 114 | 285 | 1.7E-9 | IPR003593 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 62 | 382 | 4.0E-142 | IPR013765 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 93 | 251 | 28.17351 | IPR020588 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 256 | 331 | 27.917034 | IPR020587 |
| ProSitePatterns | PS00321 | recA signature. | 270 | 278 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 184 | 213 | 2.9E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 150 | 179 | 2.9E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 222 | 251 | 2.9E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 267 | 295 | 2.9E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 302 | 331 | 2.9E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 356 | 373 | 2.9E-75 | IPR013765 |
| Hamap | MF_00268 | Protein RecA [recA]. | 63 | 388 | 44.583103 | IPR013765 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79050.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_002466766.1 | DNA repair protein recA homolog 1, chloroplastic [Sorghum bicolor] | 0 |
| Q39199 | DNA repair protein recA homolog 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RECA PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9WDL2 | Uncharacterized protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_05497 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology