halophFGD

Basic Information

Locus ID: Chr07G021370

Species & Taxonomic ID: Sporobolus alterniflorus & 29706

Genome Assembly: GWHCBIM00000000

Description: Zinc finger, C3HC4 type family protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
GWHCBIM00000007	50460219	50461067	-	Chr07G021370

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
0.00	0.00 Da	0.00	0.00	0.00

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF12678	RING-H2 zinc finger domain	119	159	2.1E-7	IPR024766
SUPERFAMILY	SSF57850	RING/U-box	116	164	1.13E-9	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	114	160	2.5E-10	IPR013083

Gene Ontology

Molecular Function:

GO:0008270 (zinc ion binding)

KEGG Pathway

KO Term:

K22378 (E3 ubiquitin-protein ligase RNF181 [EC:2.3.2.27])

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_021317076.1	RING-H2 finger protein ATL74 [Sorghum bicolor]	0
TrEMBL	A0A5J9UUK8	RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_29289 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Sporobolus alterniflorus	2	Chr07G021370, Chr30G004830