Basic Information
Locus ID:
Chr07G020260
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000007 | 48248127 | 48258494 | + | Chr07G020260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 313 | 341 | 0.083 | IPR001680 |
| Pfam | PF12937 | F-box-like | 64 | 104 | 1.0E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 57 | 112 | 3.4E-11 | IPR036047 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 160 | 463 | 4.39E-34 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 158 | 467 | 1.8E-31 | IPR015943 |
| Gene3D | G3DSA:1.20.1280.50 | - | 60 | 99 | 2.1E-8 | - |
| SMART | SM00320 | WD40_4 | 260 | 297 | 1.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 300 | 341 | 0.027 | IPR001680 |
| SMART | SM00320 | WD40_4 | 344 | 384 | 76.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 217 | 257 | 280.0 | IPR001680 |
| SMART | SM00256 | fbox_2 | 62 | 103 | 0.0018 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 397 | 420 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 401 | 420 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 58 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G52030.2 | F-box family protein with WD40/YVTN repeat doamin. | 0 |
| RefSeq | XP_002450429.1 | F-box/WD-40 repeat-containing protein At3g52030 isoform X2 [Sorghum bicolor] | 0 |
| Q9SV01 | F-box/WD-40 repeat-containing protein At3g52030 OS=Arabidopsis thaliana OX=3702 GN=At3g52030 PE=4 SV=2 | 0 | |
| TrEMBL | A0A5J9URH1 | F-box domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_28712 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg26652 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15337 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035687 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g028960 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg21733, Sbi_jg21734, Sbi_jg22086 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16011 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008629 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl63034, Sgl67656 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016616, gene:ENSEOMG00000022327 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0017220, CQ.Regalona.r1.2BG0019020 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30229750, pistato.v30229760 |
| Apiaceae | Apium graveolens | 1 | Ag9G00816 |
| Arecaceae | Cocos nucifera | 1 | COCNU_15G004210 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103697300 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.2733.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G24847 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G52030.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010397m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g10260.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g074370.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0809 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0818 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g03270 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g09420 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.98 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00039348 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G13331 |
| Poaceae | Echinochloa crus-galli | 3 | AH04.517, BH04.560, CH04.563 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0670560, gene-QOZ80_9BG0693940 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0347490.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_064565 |
| Poaceae | Oryza coarctata | 1 | Oco22G003320 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g07970.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G090300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0104089, Pt_Chr0104093 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr07G020260, Chr16G010530, Chr17G009640 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G152600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG034740, gene_TRIDC4BG015170 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G218600.1, TraesCS4B02G097400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb091260_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-27212 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g18515 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.564, evm.TU.LG09.2109 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g06910 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.299 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19427 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9107 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6995 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000028l.182 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010375 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8852 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20180 |
| Salicaceae | Populus euphratica | 1 | populus_peu35908 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132644804 |
| Solanaceae | Solanum chilense | 1 | SOLCI004949700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012294 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6997 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G0071 |
| Zosteraceae | Zostera marina | 1 | Zosma02g22840.v3.1 |