Basic Information
Locus ID:
Chr07G019720
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RNA recognition motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000007 | 46489179 | 46490921 | - | Chr07G019720 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 437 | 508 | 1.4E-14 | IPR000504 |
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 43 | 1.83E-5 | IPR036047 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 429 | 512 | 1.22E-23 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 405 | 514 | 8.3E-24 | IPR012677 |
| Gene3D | G3DSA:1.20.1280.50 | - | 8 | 46 | 1.2E-5 | - |
| SMART | SM00360 | rrm1_1 | 435 | 510 | 1.9E-20 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 434 | 514 | 16.210192 | IPR000504 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24770.1 | 31-kDa RNA binding protein. Encodes a chloroplast RNA-binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). Required for editing and stability of specific chloroplast mRNAs. | 0 |
| RefSeq | XP_034569764.1 | uncharacterized protein LOC117834253 [Setaria viridis] | 0 |
| P28644 | 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9US16 | RRM domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_28919 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology