Basic Information
Locus ID:
Chr07G018750
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000007 | 41943107 | 41945522 | + | Chr07G018750 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00314 | Thaumatin family | 2 | 59 | 2.7E-7 | IPR001938 |
| Pfam | PF00627 | UBA/TS-N domain | 62 | 98 | 1.2E-10 | IPR015940 |
| SUPERFAMILY | SSF49870 | Osmotin, thaumatin-like protein | 12 | 49 | 6.28E-10 | IPR037176 |
| SUPERFAMILY | SSF46934 | UBA-like | 51 | 101 | 1.8E-12 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 65 | 101 | 9.5E-20 | - |
| Gene3D | G3DSA:2.60.110.10 | Thaumatin | 1 | 64 | 1.6E-10 | IPR037176 |
| SMART | SM00165 | uba_6 | 63 | 100 | 1.2E-7 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 60 | 101 | 13.197515 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 74 | 88 | 5.4E-17 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 89 | 104 | 5.4E-17 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 57 | 73 | 5.4E-17 | IPR004806 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.3 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_006646967.2 | ubiquitin receptor RAD23b isoform X2 [Oryza brachyantha] | 0 |
| Q84L33 | Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3 | 0 | |
| TrEMBL | A0A5J9VA66 | Ubiquitin receptor RAD23 OS=Eragrostis curvula OX=38414 GN=EJB05_24594 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.2757.V1.1, AsparagusV1_05.3045.V1.1 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr07G018750 |