Basic Information
Locus ID:
Chr07G018000
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000007 | 35438048 | 35447685 | + | Chr07G018000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 582 | 854 | 3.22623E-91 | - |
| Pfam | PF13855 | Leucine rich repeat | 367 | 422 | 1.4E-7 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 579 | 849 | 3.3E-50 | IPR000719 |
| SUPERFAMILY | SSF52047 | RNI-like | 62 | 425 | 2.51E-40 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 556 | 851 | 1.35E-80 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 653 | 870 | 1.1E-57 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 322 | 444 | 5.5E-31 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 27 | 315 | 1.9E-64 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 536 | 652 | 1.1E-31 | - |
| SMART | SM00369 | LRR_typ_2 | 385 | 408 | 24.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 104 | 127 | 0.031 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 178 | 202 | 13.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 409 | 431 | 120.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 81 | 103 | 310.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 576 | 859 | 5.8E-46 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 576 | 855 | 41.233837 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 582 | 603 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 700 | 712 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 445 | 468 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01820.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_025827113.1 | receptor-like kinase TMK4 [Panicum hallii] | 0 |
| Q2R560 | Receptor protein kinase WSS1 OS=Oryza sativa subsp. japonica OX=39947 GN=WSS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9UQG0 | Protein kinase domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_28090 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | BH04.1153, CH04.1339 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_4BG0351990, gene-QOZ80_9AG0681760 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0374020.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_067050 |
| Poaceae | Oryza coarctata | 2 | Oco21G005150, Oco22G006180 |
| Poaceae | Oryza sativa | 2 | LOC_Os08g41430.1, LOC_Os11g26130.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G135600 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr05G021660, Chr07G018000, Chr31G004400 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G266400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG023700, gene_TRIDC4BG025710 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G147700.1, TraesCS4B02G165600.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb112700_P001, Zm00001eb169350_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-38701 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g18762 |