Basic Information
Locus ID:
Chr07G017790
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Short Name:
UBP5
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000007 | 32620839 | 32636642 | - | Chr07G017790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 737 | 889 | 1.07321E-60 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 319 | 888 | 3.5E-86 | IPR001394 |
| Pfam | PF06337 | DUSP domain | 35 | 136 | 3.1E-22 | IPR006615 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 493 | 643 | 3.2E-9 | IPR029346 |
| SUPERFAMILY | SSF143791 | DUSP-like | 13 | 136 | 6.15E-26 | IPR035927 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 317 | 891 | 4.71E-108 | IPR038765 |
| Gene3D | G3DSA:3.30.2230.10 | - | 5 | 148 | 4.0E-34 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 149 | 234 | 1.1E-13 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 312 | 600 | 8.6E-66 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 669 | 899 | 4.1E-57 | - |
| SMART | SM00695 | dusp | 31 | 138 | 2.4E-28 | IPR006615 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 12 | 135 | 19.096342 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 319 | 891 | 56.225452 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 836 | 853 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 320 | 335 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40930.1 | ubiquitin-specific protease 5. Encodes ubiquitin-specific protease with nuclear localization signals that is likely to be involved in ubiquitin-mediated protein degradation. | 0 |
| RefSeq | XP_004979260.1 | ubiquitin carboxyl-terminal hydrolase 5 [Setaria italica] | 0 |
| O22207 | Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana OX=3702 GN=UBP5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9UP27 | Ubiquitin carboxyl-terminal hydrolase OS=Eragrostis curvula OX=38414 GN=EJB05_27992 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology