Basic Information
Locus ID:
Chr07G017260
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Short Name:
AFB3
Description:
Leucine-rich repeats, outliers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000007 | 26288906 | 26294138 | + | Chr07G017260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 2 | 41 | 4.4E-18 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 61 | 107 | 4.3E-20 | IPR041101 |
| SUPERFAMILY | SSF52047 | RNI-like | 80 | 513 | 1.04E-27 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 2 | 53 | 1.09E-6 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 40 | 8.7E-16 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 41 | 576 | 4.5E-161 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 366 | 390 | 64.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 99 | 123 | 19.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 178 | 204 | 630.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 124 | 149 | 260.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 309 | 332 | 180.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 475 | 499 | 130.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 426 | 449 | 690.0 | IPR006553 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26810.1 | auxin signaling F-box 2. | 0 |
| RefSeq | XP_004979343.1 | transport inhibitor response 1-like protein Os11g0515500 [Setaria italica] | 0 |
| Q2R3K5 | Transport inhibitor response 1-like protein Os11g0515500 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0515500 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0A9INN3 | F-box domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology