Basic Information
Locus ID:
Chr07G017130
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Ubiquitin associated domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000007 | 25334630 | 25335352 | - | Chr07G017130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06849 | lipoyl_domain | 20 | 77 | 8.74026E-11 | - |
| Pfam | PF00364 | Biotin-requiring enzyme | 30 | 78 | 5.5E-5 | IPR000089 |
| Pfam | PF00240 | Ubiquitin family | 134 | 190 | 7.2E-14 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 129 | 191 | 1.26E-16 | IPR029071 |
| SUPERFAMILY | SSF51230 | Single hybrid motif | 20 | 93 | 2.22E-10 | IPR011053 |
| Gene3D | G3DSA:2.40.50.100 | - | 16 | 106 | 3.8E-11 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 131 | 196 | 2.2E-13 | - |
| SMART | SM00213 | ubq_7 | 131 | 202 | 9.3E-6 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 131 | 190 | 15.405305 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 116 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G34430.1 | 2-oxoacid dehydrogenases acyltransferase family protein. | 0 |
| RefSeq | XP_044395986.1 | dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [Triticum aestivum] | 0 |
| Q9C8P0 | Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=EMB3003 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9WTK9 | Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_02658 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000013134 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G001150, COCNU_14G007100 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.1284.V1.1, AsparagusV1_05.1496.V1.1 ... |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g01930 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G01234, Lb2G15417 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr07G017130 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5BG020310 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG07.1169 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26499 |