Basic Information
Locus ID:
Chr07G016910
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Alpha mannosidase, middle domain
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000007 | 24142600 | 24154954 | - | Chr07G016910 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 493 | 706 | 1.0E-41 | IPR011682 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 3 | 243 | 9.0E-63 | IPR000602 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 249 | 334 | 4.8E-17 | IPR015341 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 348 | 880 | 2.2E-128 | IPR011013 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 248 | 342 | 8.17E-25 | IPR028995 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 3 | 246 | 6.89E-73 | IPR011330 |
| Gene3D | G3DSA:2.70.98.30 | - | 489 | 754 | 2.9E-90 | - |
| Gene3D | G3DSA:2.60.40.1180 | - | 360 | 484 | 3.2E-27 | IPR013780 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 283 | 341 | 4.3E-22 | IPR037094 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 1 | 211 | 5.1E-78 | IPR027291 |
| Gene3D | G3DSA:2.60.40.1360 | - | 774 | 884 | 1.7E-22 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 212 | 282 | 1.0E-26 | IPR037094 |
| SMART | SM00872 | Alpha_mann_mid_2 | 248 | 316 | 5.2E-15 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13980.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_025827081.1 | probable alpha-mannosidase At5g13980 [Panicum hallii] | 0 |
| Q8LPJ3 | Probable alpha-mannosidase At5g13980 OS=Arabidopsis thaliana OX=3702 GN=At5g13980 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0A8ZMK7 | Alpha-mannosidase OS=Arundo donax OX=35708 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology