Basic Information
Locus ID:
Chr07G015920
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000007 | 21089319 | 21112642 | + | Chr07G015920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 59 | 182 | 1.91528E-37 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 200 | 508 | 1.05803E-152 | - |
| Pfam | PF00917 | MATH domain | 64 | 184 | 9.4E-19 | IPR002083 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 591 | 833 | 1.4E-62 | IPR024729 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 202 | 503 | 4.4E-36 | IPR001394 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 843 | 1052 | 6.6E-52 | IPR029346 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 59 | 188 | 4.09E-37 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 197 | 533 | 8.24E-87 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 199 | 507 | 1.9E-80 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 651 | 758 | 7.8E-30 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 759 | 856 | 1.5E-26 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 56 | 198 | 6.7E-49 | IPR008974 |
| SMART | SM00061 | math_3 | 59 | 163 | 6.3E-21 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 202 | 506 | 36.970387 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 57 | 182 | 37.471367 | IPR002083 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 422 | 439 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 203 | 218 | - | IPR018200 |
| Coils | Coil | Coil | 522 | 542 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11910.1 | ubiquitin-specific protease 13. | 0 |
| RefSeq | XP_015617197.1 | ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Oryza sativa Japonica Group] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9UMG0 | ubiquitinyl hydrolase 1 (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_27399 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology