Basic Information
Locus ID:
Chr07G015330
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000007 | 19671294 | 19676106 | - | Chr07G015330 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 276 | 350 | 8.77046E-35 | - |
| CDD | cd12352 | RRM1_TIA1_like | 74 | 144 | 2.05143E-34 | - |
| CDD | cd12619 | RRM2_PUB1 | 158 | 232 | 6.555E-47 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 159 | 229 | 2.9E-19 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 278 | 344 | 3.5E-14 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 74 | 140 | 2.0E-13 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 71 | 235 | 4.96E-45 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 268 | 360 | 9.64E-24 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 258 | 355 | 8.7E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 155 | 257 | 6.1E-26 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 154 | 1.9E-26 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 158 | 231 | 1.4E-23 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 158 | 231 | 0.29 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 277 | 346 | 2.7E-19 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 277 | 346 | 1.6 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 73 | 142 | 2.5E-17 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 276 | 350 | 16.670687 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 72 | 146 | 15.834971 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 157 | 235 | 17.949841 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 273 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 249 | 273 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | NP_001150056.2 | Oligouridylate-binding protein 1B [Zea mays] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9UKX4 | Oligouridylate binding protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_26337 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology