Basic Information
Locus ID:
Chr07G015060
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000007 | 19339270 | 19346524 | + | Chr07G015060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 2 | 44 | 7.94398E-10 | - |
| Pfam | PF12906 | RING-variant domain | 4 | 43 | 5.1E-7 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 3 | 48 | 1.17E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 58 | 9.3E-11 | IPR013083 |
| SMART | SM00744 | ringv_2 | 1 | 44 | 8.8E-5 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 1 | 50 | 14.893322 | IPR011016 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22120.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_039777552.1 | uncharacterized protein LOC120644879 [Panicum virgatum] | 0 |
| TrEMBL | A0A5J9UMD8 | RING-CH-type domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_26841 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology