Basic Information
Locus ID:
Chr07G013990
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000007 | 17077450 | 17080358 | + | Chr07G013990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 210 | 407 | 4.40083E-100 | - |
| CDD | cd18794 | SF2_C_RecQ | 408 | 541 | 9.02681E-66 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 425 | 530 | 1.0E-18 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 218 | 387 | 1.8E-15 | IPR011545 |
| Pfam | PF16124 | RecQ zinc-binding | 544 | 613 | 7.2E-12 | IPR032284 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 256 | 552 | 6.92E-54 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 174 | 407 | 3.4E-83 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 408 | 616 | 8.6E-62 | IPR027417 |
| SMART | SM00487 | ultradead3 | 212 | 416 | 2.0E-27 | IPR014001 |
| SMART | SM00490 | helicmild6 | 450 | 532 | 1.3E-24 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 210 | 614 | 5.7E-155 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 224 | 400 | 20.807844 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 422 | 572 | 19.969788 | IPR001650 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 339 | 348 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 162 | 186 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 143 | 161 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 101 | 187 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.1 | RECQ helicase l1. | 0 |
| RefSeq | XP_004980856.3 | ATP-dependent DNA helicase Q-like 1 [Setaria italica] | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9UK77 | ATP-dependent DNA helicase OS=Eragrostis curvula OX=38414 GN=EJB05_25964 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology