Basic Information
Locus ID:
Chr07G013810
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Type III restriction enzyme, res subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000007 | 16901697 | 16904102 | - | Chr07G013810 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 59 | 188 | 1.285E-63 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 71 | 179 | 2.2E-33 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 2 | 194 | 6.65E-51 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 50 | 221 | 1.2E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 49 | 3.7E-12 | IPR027417 |
| SMART | SM00490 | helicmild6 | 99 | 179 | 8.5E-33 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 74 | 218 | 25.372437 | IPR001650 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 500 | 520 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 554 | 568 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 414 | 492 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 358 | 573 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G14610.3 | - | 0 |
| RefSeq | XP_004980011.1 | DEAD-box ATP-dependent RNA helicase 40 isoform X2 [Setaria italica] | 0 |
| Q8H136 | DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana OX=3702 GN=RH14 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9UHX8 | DEAD-box ATP-dependent RNA helicase 40 OS=Eragrostis curvula OX=38414 GN=EJB05_25752 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology