Basic Information
Locus ID:
Chr07G007270
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RNA pseudouridylate synthase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000007 | 6991338 | 6996287 | + | Chr07G007270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02870 | PseudoU_synth_RsuA_like | 216 | 373 | 2.09459E-45 | - |
| CDD | cd00165 | S4 | 153 | 220 | 1.78331E-9 | IPR002942 |
| Pfam | PF00849 | RNA pseudouridylate synthase | 216 | 358 | 2.1E-18 | IPR006145 |
| Pfam | PF01479 | S4 domain | 153 | 194 | 3.0E-12 | IPR002942 |
| SUPERFAMILY | SSF55174 | Alpha-L RNA-binding motif | 142 | 238 | 1.83E-17 | - |
| SUPERFAMILY | SSF55120 | Pseudouridine synthase | 214 | 396 | 8.0E-34 | IPR020103 |
| Gene3D | G3DSA:3.10.290.10 | - | 148 | 210 | 3.7E-18 | IPR036986 |
| Gene3D | G3DSA:3.30.70.580 | - | 216 | 395 | 4.2E-48 | IPR020094 |
| Gene3D | G3DSA:3.30.70.1560 | - | 292 | 377 | 4.2E-48 | IPR042092 |
| SMART | SM00363 | s4_6 | 153 | 217 | 3.4E-12 | IPR002942 |
| TIGRFAM | TIGR00093 | TIGR00093: pseudouridine synthase | 220 | 391 | 2.4E-33 | IPR000748 |
| ProSiteProfiles | PS50889 | S4 RNA-binding domain profile. | 153 | 222 | 14.432522 | - |
| ProSitePatterns | PS01149 | Rsu family of pseudouridine synthase signature. | 263 | 277 | - | IPR018496 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 68 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39140.1 | pseudouridine synthase family protein. Suppressor of var2 variegation phenotype. Chloroplast localized. Loss of function mutant has defects in chloroplast protein translation and rRNA processing. Similar in sequence to pseudouridine synthase proteins. | 0 |
| RefSeq | XP_039779939.1 | putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic isoform X1 [Panicum virgatum] | 0 |
| Q8L960 | Putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SVR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9WJ79 | S4 domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_07993 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg34362 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18540 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah025441 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g079150, BVRB_6g142930 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12892, Sbi_jg52978 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8879 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017701 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl32899, Sgl38239 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000000106, gene:ENSEOMG00000000156 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0013090, CQ.Regalona.r1.6BG0013840 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30170710 |
| Apiaceae | Apium graveolens | 1 | Ag11G03754 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G010960 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720767 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.1564.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G33780 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G39140.1, AT3G43340.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016747m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g21490.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g005590.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0563 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g04220 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0459s00006.v1.0, Dusal.0755s00004.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g06860 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1085 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00035041 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G05292 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.4939, BH01.4875, BH01.5123 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0234110, gene-QOZ80_3BG0293890 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0400870.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_070677 |
| Poaceae | Oryza coarctata | 2 | Oco05G003210, Oco06G003230 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g05806.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G477400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0103097, Pt_Chr0601943 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G003940, Chr04G004260, Chr07G007270 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G454900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG005060, gene_TRIDC4BG046640 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G036500.1, TraesCS4B02G269400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb004240_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-2873 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g2047 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1902, evm.TU.LG14.193 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g01220 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.1593 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-26148, nbisL1-mrna-26150, nbisL1-mrna-26151 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7182 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4414 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.871 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000227 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2181 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9576 |
| Salicaceae | Populus euphratica | 2 | populus_peu06232, populus_peu20068 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132614208 |
| Solanaceae | Solanum chilense | 1 | SOLCI003201000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107004655 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13342 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G1552 |
| Zosteraceae | Zostera marina | 1 | Zosma03g16070.v3.1 |