Basic Information
Locus ID:
Chr07G005690
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000007 | 5409357 | 5412999 | + | Chr07G005690 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 320 | 355 | 7.0E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 449 | 485 | 5.9E-5 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 241 | 296 | 3.8E-5 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 360 | 400 | 0.011 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 191 | 489 | 1.1E-58 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 182 | 490 | 9.0E-125 | IPR015943 |
| SMART | SM00320 | WD40_4 | 358 | 400 | 4.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 402 | 443 | 270.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 275 | 312 | 0.23 | IPR001680 |
| SMART | SM00320 | WD40_4 | 232 | 272 | 0.072 | IPR001680 |
| SMART | SM00320 | WD40_4 | 316 | 355 | 1.6E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 188 | 229 | 230.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 446 | 485 | 1.7E-8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 453 | 486 | 11.919224 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 453 | 486 | 14.41838 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 323 | 364 | 13.449252 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 323 | 355 | 11.022865 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 240 | 281 | 8.637032 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 472 | 486 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 64 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22910.1 | FIZZY-related 2. | 0 |
| RefSeq | XP_025793598.1 | protein FIZZY-RELATED 2-like [Panicum hallii] | 0 |
| Q9M7I2 | B-type cell cycle switch protein ccs52A OS=Medicago truncatula OX=3880 GN=CCS52A PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9WMT1 | ANAPC4_WD40 domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_08215 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology