Basic Information
Locus ID:
Chr07G004790
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000007 | 4425739 | 4430159 | + | Chr07G004790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 324 | 364 | 6.74754E-29 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 323 | 369 | 3.6E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 324 | 370 | 2.94E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 309 | 374 | 3.1E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 325 | 363 | 2.0E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 325 | 364 | 11.441815 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 60 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09770.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_025795032.1 | probable E3 ubiquitin-protein ligase LOG2 [Panicum hallii] | 0 |
| Q9S752 | Probable E3 ubiquitin-protein ligase LOG2 OS=Arabidopsis thaliana OX=3702 GN=LOG2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0P1P5 | RING-type E3 ubiquitin transferase OS=Panicum virgatum OX=38727 GN=PVAP13_9KG517700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology