Basic Information
Locus ID:
Chr07G004140
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000007 | 3796932 | 3801515 | + | Chr07G004140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 130 | 182 | 1.22742E-23 | - |
| Pfam | PF12315 | Protein DA1 | 279 | 494 | 3.4E-100 | IPR022087 |
| Pfam | PF00412 | LIM domain | 130 | 184 | 3.7E-9 | IPR001781 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 156 | 210 | 2.8E-5 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 125 | 155 | 3.11E-7 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 125 | 189 | 9.9E-13 | - |
| SMART | SM00132 | lim_4 | 129 | 181 | 8.9E-10 | IPR001781 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 128 | 188 | 11.3455 | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 130 | 164 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 419 | 443 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 419 | 441 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 79 | 96 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 72 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 96 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39830.1 | DA1-related protein 2. | 0 |
| RefSeq | XP_004984915.1 | protein DA1-related 2 isoform X2 [Setaria italica] | 0 |
| Q10NJ6 | LIM domain-containing protein HDR3 OS=Oryza sativa subsp. japonica OX=39947 GN=HDR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9WH47 | LIM zinc-binding domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_07215 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology