Basic Information
Locus ID:
Chr07G003810
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000007 | 3424968 | 3431470 | - | Chr07G003810 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 294 | 336 | 1.50112E-26 | - |
| Pfam | PF04564 | U-box domain | 290 | 360 | 3.7E-20 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 498 | 536 | 3.0E-9 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 416 | 454 | 1.9E-9 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 280 | 365 | 6.67E-30 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 388 | 661 | 1.69E-50 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 459 | 564 | 1.8E-24 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 290 | 363 | 9.7E-31 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 366 | 458 | 3.9E-10 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 565 | 682 | 2.7E-14 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 49 | 160 | 1.4E-5 | IPR036537 |
| SMART | SM00185 | arm_5 | 415 | 455 | 6.1E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 579 | 619 | 160.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 373 | 413 | 39.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 293 | 356 | 2.3E-33 | IPR003613 |
| SMART | SM00185 | arm_5 | 456 | 496 | 7.4 | IPR000225 |
| SMART | SM00185 | arm_5 | 497 | 537 | 0.0012 | IPR000225 |
| SMART | SM00185 | arm_5 | 538 | 578 | 13.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 623 | 663 | 450.0 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 426 | 468 | 12.0924 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 549 | 591 | 9.5724 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 289 | 363 | 45.291752 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 508 | 550 | 9.4324 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 49 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_025793712.1 | protein spotted leaf 11-like [Panicum hallii] | 0 |
| A2ZLU6 | Protein spotted leaf 11 OS=Oryza sativa subsp. indica OX=39946 GN=SPL11 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3L6S9A7 | RING-type E3 ubiquitin transferase OS=Panicum miliaceum OX=4540 GN=C2845_PM02G30150 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology