Basic Information
Locus ID:
Chr07G002930
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000007 | 2636772 | 2639710 | + | Chr07G002930 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02005 | TPP_PDC_IPDC | 406 | 588 | 3.42943E-86 | - |
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 47 | 208 | 3.9387E-91 | - |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 45 | 214 | 6.3E-36 | IPR012001 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 451 | 576 | 5.9E-14 | IPR011766 |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 241 | 358 | 2.4E-19 | IPR012000 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 44 | 223 | 4.76E-44 | IPR029061 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 406 | 600 | 5.0E-40 | IPR029061 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 230 | 381 | 4.28E-30 | IPR029035 |
| Gene3D | G3DSA:3.40.50.970 | - | 400 | 587 | 1.4E-54 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 41 | 217 | 8.9E-61 | - |
| Gene3D | G3DSA:3.40.50.1220 | - | 231 | 393 | 1.4E-39 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 39 | 600 | 1.7E-206 | IPR012110 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 22 | 5.0 | - |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33070.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 0 |
| RefSeq | XP_004984863.1 | pyruvate decarboxylase 2 [Setaria italica] | 0 |
| A2XFI3 | Pyruvate decarboxylase 2 OS=Oryza sativa subsp. indica OX=39946 GN=PDC2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3L6SAD6 | pyruvate decarboxylase OS=Panicum miliaceum OX=4540 GN=C2845_PM02G29240 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology