Basic Information
Locus ID:
Chr07G002920
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Protein CHUP1, chloroplastic-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000007 | 2626665 | 2633297 | - | Chr07G002920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 74 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 74 | - | - |
| Coils | Coil | Coil | 270 | 290 | - | - |
| Coils | Coil | Coil | 9 | 50 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G07120.1 | 0 | |
| RefSeq | XP_004984865.1 | protein CHUP1, chloroplastic [Setaria italica] | 0 |
| Q9LMK4 | INCREASED PETAL GROWTH ANISOTROPY 1-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=IPGAL1 PE=3 SV=1 | 0 | |
| TrEMBL | K4AAF8 | Protein CHUP1, chloroplastic OS=Setaria italica OX=4555 GN=101777163 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25757 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah031077, Ah037621 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g207240 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg2416 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24113 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00025994 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl78742, Sgl78760, Sgl81211 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000039298, gene:ENSEOMG00000051296 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0005490, CQ.Regalona.r1.9BG0016660 |
| Apiaceae | Apium graveolens | 1 | Ag6G02139 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103695774 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.271.V1.1, AsparagusV1_07.566.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | FtriNA08323 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G07120.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007909m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g05870.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g002070.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1848 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1905 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.1065 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G30955 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.3978, BH01.4371, CH01.4611 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0244380, gene-QOZ80_3BG0283780 |
| Poaceae | Oryza coarctata | 2 | Oco05G010720, Oco06G010960 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g18300.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G388200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0102430, Pt_Chr0102458 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G032120, Chr04G008780, Chr07G002920, Chr12G007490 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G344700 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC4BG033650 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G111000.1, TraesCS4B02G193100.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb013540_P001, Zm00001eb396920_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-1950 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g1439 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_12_RagTag.110, evm.TU.Scaffold_13_RagTag.950 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24688, nbisL1-mrna-30067 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-15484, nbisL1-mrna-15677 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16312, nbisL1-mrna-19416 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000015l.561, evm.TU.utg000027l.502 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017887 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-4467, nbisL1-mrna-5492 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11644, nbisL1-mrna-20840 |
| Salicaceae | Populus euphratica | 2 | populus_peu01743, populus_peu36068 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.29668_chr10_-, gene_14603 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G2698, TC03G0065 |