Basic Information
Locus ID:
Chr07G001770
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Leucine Rich Repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000007 | 1639603 | 1643863 | - | Chr07G001770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 763 | 1039 | 2.753E-86 | - |
| Pfam | PF13516 | Leucine Rich repeat | 288 | 303 | 0.54 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 311 | 325 | 0.65 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 163 | 177 | 1.6 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 762 | 978 | 9.0E-24 | IPR001245 |
| Pfam | PF13855 | Leucine rich repeat | 86 | 127 | 4.3E-7 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 73 | 429 | 1.73E-46 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 430 | 559 | 2.13E-17 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 760 | 1036 | 9.83E-39 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 141 | 209 | 1.4E-12 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 750 | 834 | 5.6E-11 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 836 | 1042 | 1.7E-30 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 19 | 140 | 2.0E-22 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 210 | 581 | 9.0E-76 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 489 | 513 | 120.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 90 | 113 | 24.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 262 | 286 | 8.8 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 162 | 185 | 200.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 114 | 138 | 21.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 757 | 1039 | 23.552204 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 688 | 726 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 627 | 662 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 693 | 716 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 627 | 663 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27060.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | NP_001351653.1 | probable inactive receptor kinase precursor [Zea mays] | 0 |
| Q0WR59 | Probable inactive receptor kinase At5g10020 OS=Arabidopsis thaliana OX=3702 GN=At5g10020 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9WIY0 | Protein kinase domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_06847 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg35647 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_20923 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g207150 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg2506, Sbi_jg59689 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24194 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl78800, Sgl81273 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30055030 |
| Arecaceae | Cocos nucifera | 3 | COCNU_02G007670, scaffold000460G000010 ... |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103713859 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.43.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G00468 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G27060.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001893m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g08210.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g016230.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1472 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1471 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g04570 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-574 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.68 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026647 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.3818, BH01.4157, CH01.4435 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0246360, gene-QOZ80_3BG0281830 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0380480.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_068301 |
| Poaceae | Oryza coarctata | 2 | Oco05G012130, Oco06G014280 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g20450.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G371000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0107870 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G033400, Chr04G010020, Chr07G001770, Chr12G006190 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G320000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG017650, gene_TRIDC4BG034640 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G127200.1, TraesCS4B02G177400.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb049870_P001, Zm00001eb238200_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-1775 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g1322 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g06550 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.599 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-30469 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11214 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15983 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.327 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015815 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4246 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15194 |
| Salicaceae | Populus euphratica | 2 | populus_peu08487, populus_peu36854 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132600709 |
| Solanaceae | Solanum chilense | 1 | SOLCI002775600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031273 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.29674_chr10_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G0074 |
| Zosteraceae | Zostera marina | 1 | Zosma01g32880.v3.1 |