Basic Information
Locus ID:
Chr07G000330
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000007 | 225681 | 232817 | + | Chr07G000330 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 916 | 949 | 0.0033 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 450 | 486 | 0.0017 | IPR001680 |
| SUPERFAMILY | SSF51004 | C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase | 890 | 1094 | 1.39E-14 | IPR011048 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 344 | 530 | 5.62E-25 | IPR036322 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 475 | 954 | 1.96E-41 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 321 | 511 | 3.2E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 512 | 688 | 3.9E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 799 | 1054 | 5.5E-30 | IPR015943 |
| SMART | SM00320 | WD40_4 | 867 | 907 | 1.6 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 5.2E-5 | IPR006594 |
| SMART | SM00668 | ctlh | 34 | 92 | 3.9E-13 | IPR006595 |
| SMART | SM00320 | WD40_4 | 446 | 487 | 2.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 910 | 949 | 1.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 340 | 379 | 21.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 396 | 440 | 4.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 580 | 620 | 6.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 827 | 864 | 36.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1000 | 1041 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 534 | 577 | 37.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 490 | 531 | 0.087 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 917 | 949 | 12.212779 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 917 | 949 | 10.179234 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.212169 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.129864 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 453 | 496 | 9.806668 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 474 | 488 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1096 | 1131 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1106 | 1131 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.2 | TOPLESS-related 1. | 0 |
| RefSeq | XP_025792937.1 | protein TPR3 isoform X2 [Panicum hallii] | 0 |
| Q10NY2 | Protein TPR3 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2T8I5I9 | TOPLESS OS=Panicum hallii OX=206008 GN=PAHAL_9G528200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology