Basic Information
Locus ID:
Chr07G000300
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
LisH
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000007 | 211332 | 212668 | + | Chr07G000300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 143 | 171 | 0.03 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 2 | 15 | 0.22 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 54 | 87 | 0.055 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 2 | 171 | 5.33E-25 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 172 | 4.3E-25 | IPR015943 |
| SMART | SM00320 | WD40_4 | 48 | 88 | 0.01 | IPR001680 |
| SMART | SM00320 | WD40_4 | 134 | 172 | 0.15 | IPR001680 |
| SMART | SM00320 | WD40_4 | 91 | 131 | 24.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 140 | 172 | 9.572741 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1 | 17 | 11.143396 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1 | 17 | 9.335602 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 140 | 172 | 9.414692 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 2 | 16 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 75 | 89 | 7.5E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 159 | 172 | 7.5E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 2 | 16 | 7.5E-5 | IPR020472 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_034575523.1 | transcriptional corepressor LEUNIG-like isoform X2 [Setaria viridis] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9WL79 | LisH domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_08321 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | AH01.5029 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0230570, gene-QOZ80_3BG0297310 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G512100 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr07G000290, Chr07G000300 |