Basic Information
Locus ID:
Chr06G035330
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000006 | 60915535 | 60922239 | - | Chr06G035330 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 80 | 128 | 3.82954E-19 | - |
| Pfam | PF12906 | RING-variant domain | 80 | 127 | 2.0E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 77 | 131 | 6.57E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 63 | 139 | 1.0E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 79 | 128 | 1.2E-16 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 72 | 134 | 20.850754 | IPR011016 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50440.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_025793110.1 | E3 ubiquitin-protein ligase MARCH1 isoform X1 [Panicum hallii] | 0 |
| Q8TCQ1 | E3 ubiquitin-protein ligase MARCHF1 OS=Homo sapiens OX=9606 GN=MARCHF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2T7F1J6 | RING-CH-type domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_1G026800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology