Basic Information
Locus ID:
Chr06G034850
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000006 | 60470018 | 60475011 | - | Chr06G034850 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00130 | PAS | 35 | 142 | 3.55496E-7 | IPR000014 |
| Pfam | PF13415 | Galactose oxidase, central domain | 403 | 452 | 1.0E-5 | - |
| Pfam | PF13418 | Galactose oxidase, central domain | 287 | 328 | 6.1E-9 | - |
| Pfam | PF13418 | Galactose oxidase, central domain | 338 | 388 | 5.6E-9 | - |
| Pfam | PF13418 | Galactose oxidase, central domain | 509 | 554 | 1.0E-4 | - |
| Pfam | PF12937 | F-box-like | 199 | 237 | 1.0E-6 | IPR001810 |
| Pfam | PF13426 | PAS domain | 34 | 142 | 1.0E-14 | IPR000014 |
| SUPERFAMILY | SSF117281 | Kelch motif | 473 | 593 | 4.58E-12 | IPR015915 |
| SUPERFAMILY | SSF117281 | Kelch motif | 274 | 497 | 6.15E-36 | IPR015915 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | 35 | 143 | 3.32E-19 | IPR035965 |
| SUPERFAMILY | SSF81383 | F-box domain | 185 | 246 | 1.07E-12 | IPR036047 |
| Gene3D | G3DSA:2.120.10.80 | - | 275 | 440 | 1.9E-32 | IPR015915 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | 32 | 154 | 7.8E-44 | - |
| Gene3D | G3DSA:2.120.10.80 | - | 441 | 601 | 1.5E-22 | IPR015915 |
| Gene3D | G3DSA:1.20.1280.50 | - | 186 | 274 | 2.2E-8 | - |
| SMART | SM00256 | fbox_2 | 194 | 235 | 0.0043 | IPR001810 |
| TIGRFAM | TIGR00229 | sensory_box: PAS domain S-box protein | 47 | 142 | 4.1E-8 | IPR000014 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 189 | 235 | 8.888098 | IPR001810 |
| ProSiteProfiles | PS50112 | PAS repeat profile. | 48 | 103 | 10.715037 | IPR000014 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57360.1 | Galactose oxidase/kelch repeat superfamily protein. Encodes clock-associated PAS protein ZTL; Also known as FKF1-like protein 2 or ADAGIO1(ADO1). A protein containing a PAS domain ZTL contributes to the plant fitness (carbon fixation, biomass) by influencing the circadian clock period. ZTL is the F-box component of an SCF complex implicated in the degradation of TOC1. | 0 |
| RefSeq | XP_002451556.1 | putative adagio-like protein 2 [Sorghum bicolor] | 0 |
| Q67UX0 | Putative adagio-like protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0150800 PE=3 SV=1 | 0 | |
| TrEMBL | A0A126X0Y4 | Putative LOV domain-containing protein OS=Eleusine coracana OX=4511 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg15714, jg31460, jg33156, jg33157, jg4112, jg5124 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_10806, gene_3726 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah013334, Ah014762 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_6g154770, BVRB_8g198410 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg25165, Sbi_jg43112, Sbi_jg45707, Sbi_jg9007 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg11549, Seu_jg19583 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00001926, GOSA_00007636 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl41241, Sgl42442, Sgl47171 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000001898, gene:ENSEOMG00000002509 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.6AG0007340, CQ.Regalona.r1.6BG0007940 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30218410 |
| Apiaceae | Apium graveolens | 3 | Ag6G02087, Ag8G01883, AgUnG00702 |
| Arecaceae | Cocos nucifera | 3 | COCNU_01G003740, COCNU_03G009890, COCNU_11G012840 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103695941, gene-LOC103698624, gene-LOC120111270 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.57.V1.1, AsparagusV1_03.1576.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri14G03548, Ftri18G17748, Ftri7G21950 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G68050.1, AT2G18915.2, AT5G57360.2 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10013003m.g.v1.0, Thhalv10018284m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g32390.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g067910.2N, BniB03g067960.2N, BniB03g067980.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G1119, Ceq09G0828 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G1211, Cgl09G0870 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g07200, gene.Cymno11g08700 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate01g11570, gene.Thate04g24520, gene.Thate07g07220 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2459 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.1232, evm.TU.LG07.160 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00017341, Pov_00027674 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G17095, Lb3G17104 |
| Poaceae | Echinochloa crus-galli | 8 | AH04.1566, AH06.2815, BH04.1579, BH06.2609, BH07.494 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_2AG0101720, gene-QOZ80_2BG0155110 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.4HG0369880.1, HORVU.MOREX.r3.6HG0560010.1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_007521, gene-QYE76_020560, gene-QYE76_035848 ... |
| Poaceae | Oryza coarctata | 6 | Oco03G002570, Oco04G002510, Oco11G015910, Oco12G016230 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os02g05700.2, LOC_Os06g47890.2, LOC_Os11g34460.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_04G039600, gene-BS78_05G164600 ... |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0202711, Pt_Chr0401164, Pt_Chr0405086, Pt_Chr0704529 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr02G032380, Chr06G034850, Chr07G016360, Chr10G021150 ... |
| Poaceae | Thinopyrum elongatum | 5 | Tel4E01G303100, Tel6E01G274600, Tel6E01G736800 ... |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC4AG025480, gene_TRIDC4BG027180 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS4A02G164000.1, TraesCS4B02G157500.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb113780_P002, Zm00001eb201580_P002 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-45742 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g18952, Zma_g31051, Zma_g33309 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.2716, evm.TU.LG03.302, evm.TU.LG12.1403 ... |
| Posidoniaceae | Posidonia oceanica | 5 | gene.Posoc01g20000, gene.Posoc01g24720, gene.Posoc03g14740 ... |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_17_RagTag.759, evm.TU.Scaffold_4_RagTag.2045 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-13290, nbisL1-mrna-23467, nbisL1-mrna-25454 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-19475, nbisL1-mrna-7833 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-16694, nbisL1-mrna-20055, nbisL1-mrna-4810 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000008l.1192, evm.TU.utg000013l.415 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00000599, Maker00004325, Maker00014969 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-10811, nbisL1-mrna-14262, nbisL1-mrna-16586 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-14283, nbisL1-mrna-14662, nbisL1-mrna-20961 |
| Salicaceae | Populus euphratica | 5 | populus_peu05422, populus_peu07219, populus_peu12039 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132603361, gene-LOC132625858 |
| Solanaceae | Solanum chilense | 2 | SOLCI005539600, SOLCI007287500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007452, gene-LOC107025998 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.12691_chr02_+, STRG.8173_chr05_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G3641, TC10G0832 |
| Zosteraceae | Zostera marina | 1 | Zosma05g26740.v3.1 |